PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00298.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 247aa    MW: 28667.3 Da    PI: 9.5077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00298.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-18550147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rg W + Ede+l ++v+q+G+++W++Ia+++  gR++k+c++rw++ 
  Rsa1.0_00298.1_g00006.1  5 RGHWRPAEDEKLRELVEQFGPHNWNAIAQKLS-GRSGKSCRLRWFNQ 50
                             899*****************************.***********996 PP

2Myb_DNA-binding53.17.4e-1757100146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              r+++T++E+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Rsa1.0_00298.1_g00006.1  57 RNPFTKDEEERLLASHRIHGNR-WSVIARFFP-GRTDNAVKNHWHV 100
                              789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.039155IPR017930Myb domain
SMARTSM007179.3E-15453IPR001005SANT/Myb domain
PfamPF002497.6E-17550IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-29598IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-27658IPR009057Homeodomain-like
CDDcd001671.69E-13849No hitNo description
PROSITE profilePS5129417.87256106IPR017930Myb domain
SMARTSM007176.9E-1556104IPR001005SANT/Myb domain
PfamPF002491.1E-135799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2059104IPR009057Homeodomain-like
CDDcd001671.87E-115999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF  60
TKDEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV IMARRGRELS KLHPRDLGHD  120
GTTVATIGYD GCDKKKRLAT ATAINYPRQF SHISHFQLLK EFLTGKIGFC HNNTPINDGA  180
INQTKRPMEF YDFLQVKTDS KKPEVIDNSR KYEEEDDVHE HNHNHNANCV PFIDFLSVKN  240
SASQGLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-3051057107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603420.11e-174PREDICTED: transcription factor MYB44-like
TrEMBLA0A078D3H21e-176A0A078D3H2_BRANA; BnaC08g37480D protein
STRINGBra031008.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28182769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-145myb domain protein 52